Featured Work

Numerical Ecology

Forfeiting the priority effect: turnover defines biofilm community succession

The ISME Journal volume 13, pages 1865–1877 (2019)

Figure 3 from ISME J

The full analysis and results are on GitHub!

Earth Microbiome

A communal catalogue reveals Earth’s multiscale microbial diversity

Nature volume 551, pages 457–463 (2017)

Figure 1 from Nature

Human Microbiome

Dynamics of the human gut microbiome in inflammatory bowel disease

Nature Microbiology volume 2, Article number: 17004 (2017)

Pipeline development

Hundo: 💯 Snakemake-based amplicon processing protocol for 16S and ITS sequences

Unite-Train: 🍄 Prebuilt ITS classifiers for the UNITE database